Variant report

Variant	rs1413051
Chromosome Location	chr13:39723712-39723713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1333432	0.83[AFR][1000 genomes]
rs1333447	0.91[AFR][1000 genomes]
rs1536345	0.83[AFR][1000 genomes]
rs1819281	0.83[AFR][1000 genomes]
rs1855267	0.83[AFR][1000 genomes]
rs1926473	0.83[AFR][1000 genomes]
rs2148420	0.83[AFR][1000 genomes]
rs2148422	0.83[AFR][1000 genomes]
rs2184134	0.83[AFR][1000 genomes]
rs2324161	0.83[AFR][1000 genomes]
rs4943636	0.83[AFR][1000 genomes]
rs4943637	0.83[AFR][1000 genomes]
rs4943638	0.83[AFR][1000 genomes]
rs7330521	0.83[AFR][1000 genomes]
rs7982413	0.83[AFR][1000 genomes]
rs9285127	0.83[AFR][1000 genomes]
rs943226	0.83[AFR][1000 genomes]
rs943228	0.83[AFR][1000 genomes]
rs943232	0.83[AFR][1000 genomes]
rs9548611	0.83[AFR][1000 genomes]
rs9548617	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39722600-39724400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:39722800-39723800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:39722800-39724000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:39723400-39723800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:39723400-39725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:39723400-39726000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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