Variant report

Variant	rs9548611
Chromosome Location	chr13:39676809-39676810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1333432	1.00[AFR][1000 genomes]
rs1333447	0.91[AFR][1000 genomes]
rs1413051	0.83[AFR][1000 genomes]
rs1536345	1.00[AFR][1000 genomes]
rs1819281	1.00[AFR][1000 genomes]
rs1855267	1.00[AFR][1000 genomes]
rs1926473	1.00[AFR][1000 genomes]
rs2148420	1.00[AFR][1000 genomes]
rs2148422	1.00[AFR][1000 genomes]
rs2184134	1.00[AFR][1000 genomes]
rs2324161	1.00[AFR][1000 genomes]
rs4943636	1.00[AFR][1000 genomes]
rs4943637	1.00[AFR][1000 genomes]
rs4943638	1.00[AFR][1000 genomes]
rs7330521	1.00[AFR][1000 genomes]
rs7982413	1.00[AFR][1000 genomes]
rs9285127	1.00[AFR][1000 genomes]
rs943226	1.00[AFR][1000 genomes]
rs943228	1.00[AFR][1000 genomes]
rs943232	1.00[AFR][1000 genomes]
rs9548617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39669000-39677000	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:39673600-39677200	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:39674600-39677800	Enhancers	Fetal Brain Male	brain
4	chr13:39675400-39677000	Weak transcription	Brain Substantia Nigra	brain
5	chr13:39675800-39679600	Weak transcription	HSMMtube	muscle
6	chr13:39676000-39677000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:39676000-39677000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:39676000-39680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:39676200-39678200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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