Variant report
| Variant | rs2148420 |
|---|---|
| Chromosome Location | chr13:39696723-39696724 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1333432 | 1.00[AFR][1000 genomes] |
| rs1333447 | 0.91[AFR][1000 genomes] |
| rs1413051 | 0.83[AFR][1000 genomes] |
| rs1536345 | 1.00[AFR][1000 genomes] |
| rs1819281 | 1.00[AFR][1000 genomes] |
| rs1855267 | 1.00[AFR][1000 genomes] |
| rs1926473 | 1.00[AFR][1000 genomes] |
| rs2148422 | 1.00[AFR][1000 genomes] |
| rs2184134 | 1.00[AFR][1000 genomes] |
| rs2324161 | 1.00[AFR][1000 genomes] |
| rs4943636 | 1.00[AFR][1000 genomes] |
| rs4943637 | 1.00[AFR][1000 genomes] |
| rs4943638 | 1.00[AFR][1000 genomes] |
| rs7330521 | 1.00[AFR][1000 genomes] |
| rs7982413 | 1.00[AFR][1000 genomes] |
| rs9285127 | 1.00[AFR][1000 genomes] |
| rs943226 | 1.00[AFR][1000 genomes] |
| rs943228 | 1.00[AFR][1000 genomes] |
| rs943232 | 1.00[AFR][1000 genomes] |
| rs9548611 | 1.00[AFR][1000 genomes] |
| rs9548617 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035255 | chr13:39618302-39715336 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39693600-39699000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
