Variant report

Variant	rs943232
Chromosome Location	chr13:39680206-39680207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1333432	1.00[AFR][1000 genomes]
rs1333447	0.91[AFR][1000 genomes]
rs1413051	0.83[AFR][1000 genomes]
rs1536345	1.00[AFR][1000 genomes]
rs1819281	1.00[AFR][1000 genomes]
rs1855267	1.00[AFR][1000 genomes]
rs1926473	1.00[AFR][1000 genomes]
rs2148420	1.00[AFR][1000 genomes]
rs2148422	1.00[AFR][1000 genomes]
rs2184134	1.00[AFR][1000 genomes]
rs2324161	1.00[AFR][1000 genomes]
rs4943636	1.00[AFR][1000 genomes]
rs4943637	1.00[AFR][1000 genomes]
rs4943638	1.00[AFR][1000 genomes]
rs7330521	1.00[AFR][1000 genomes]
rs7982413	1.00[AFR][1000 genomes]
rs9285127	1.00[AFR][1000 genomes]
rs943226	1.00[AFR][1000 genomes]
rs943228	1.00[AFR][1000 genomes]
rs9548611	1.00[AFR][1000 genomes]
rs9548617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39676000-39680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:39678000-39681800	Weak transcription	Brain Anterior Caudate	brain
3	chr13:39678000-39682600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:39678600-39680800	Weak transcription	Brain Hippocampus Middle	brain
5	chr13:39679200-39680600	Enhancers	Brain Angular Gyrus	brain
6	chr13:39679200-39680800	Enhancers	Brain Substantia Nigra	brain
7	chr13:39679200-39683400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr13:39679200-39683400	Enhancers	Fetal Muscle Leg	muscle
9	chr13:39679400-39683800	Enhancers	Fetal Brain Male	brain
10	chr13:39679600-39683400	Enhancers	Brain Cingulate Gyrus	brain
11	chr13:39679600-39683600	Enhancers	HSMMtube	muscle
12	chr13:39680000-39680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:39680000-39682400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:39680000-39688400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr13:39680200-39680400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:39680200-39683600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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