Variant report

Variant	rs13340296
Chromosome Location	chr4:166486954-166486955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011247	0.89[EUR][1000 genomes]
rs10016914	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10017098	0.89[EUR][1000 genomes]
rs10020515	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10155080	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1320227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17631610	0.83[ASN][1000 genomes]
rs2139210	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28360736	0.90[EUR][1000 genomes]
rs28435653	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4270546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4515120	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4691203	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59998429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67582214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830986	0.89[EUR][1000 genomes]
rs6853763	0.89[EUR][1000 genomes]
rs6854385	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705426	0.83[ASN][1000 genomes]
rs72705432	0.83[ASN][1000 genomes]
rs7440432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696979	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596052	chr4:166454826-166488615	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166485600-166488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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