Variant report
| Variant | rs6853763 |
|---|---|
| Chromosome Location | chr4:166487428-166487429 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10004125 | 0.91[EUR][1000 genomes] |
| rs10011247 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10016914 | 0.90[EUR][1000 genomes] |
| rs10017098 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10020515 | 0.89[EUR][1000 genomes] |
| rs10155080 | 0.85[EUR][1000 genomes] |
| rs12511070 | 0.98[ASN][1000 genomes] |
| rs1320226 | 0.88[ASN][1000 genomes] |
| rs1320227 | 0.91[EUR][1000 genomes] |
| rs13340246 | 1.00[ASN][1000 genomes] |
| rs13340296 | 0.89[EUR][1000 genomes] |
| rs1914837 | 0.88[ASN][1000 genomes] |
| rs1914839 | 0.88[ASN][1000 genomes] |
| rs2139209 | 0.85[ASN][1000 genomes] |
| rs2139210 | 0.86[EUR][1000 genomes] |
| rs28360736 | 0.85[EUR][1000 genomes] |
| rs28435653 | 0.85[EUR][1000 genomes] |
| rs28653384 | 0.99[ASN][1000 genomes] |
| rs4096262 | 0.87[ASN][1000 genomes] |
| rs4270546 | 0.90[EUR][1000 genomes] |
| rs4515120 | 0.90[EUR][1000 genomes] |
| rs4691203 | 0.90[EUR][1000 genomes] |
| rs59998429 | 0.90[EUR][1000 genomes] |
| rs6536920 | 0.96[ASN][1000 genomes] |
| rs67582214 | 0.91[EUR][1000 genomes] |
| rs6821186 | 0.90[EUR][1000 genomes] |
| rs6830986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6854385 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7440432 | 0.90[EUR][1000 genomes] |
| rs7672539 | 0.94[ASN][1000 genomes] |
| rs7695127 | 0.91[ASN][1000 genomes] |
| rs7696979 | 0.85[EUR][1000 genomes] |
| rs939078 | 0.82[ASN][1000 genomes] |
| rs9990899 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596052 | chr4:166454826-166488615 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166485600-166488600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
