Variant report

Variant	rs10155080
Chromosome Location	chr4:166475580-166475581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:166475444-166475810	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166470788..166473648-chr4:166473898..166476152,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248327	TF binding region
ENSG00000248327	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10004125	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10011247	0.85[EUR][1000 genomes]
rs10016914	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10017098	0.85[EUR][1000 genomes]
rs10020515	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1320227	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13340296	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17631610	0.94[ASN][1000 genomes]
rs2139210	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28360736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28435653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270546	0.92[EUR][1000 genomes]
rs4515120	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4691203	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59998429	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67582214	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6821186	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6830986	0.85[EUR][1000 genomes]
rs6853763	0.85[EUR][1000 genomes]
rs6854385	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72705426	0.94[ASN][1000 genomes]
rs72705432	0.94[ASN][1000 genomes]
rs7440432	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7672909	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs7673165	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7696979	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv596052	chr4:166454826-166488615	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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