Variant report
| Variant | rs7696979 |
|---|---|
| Chromosome Location | chr4:166473393-166473394 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr4:166473383-166473563 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248327 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10004125 | 0.93[EUR][1000 genomes] |
| rs10011247 | 0.85[EUR][1000 genomes] |
| rs10016914 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10017098 | 0.85[EUR][1000 genomes] |
| rs10020515 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10155080 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1320227 | 0.93[EUR][1000 genomes] |
| rs13340296 | 0.90[EUR][1000 genomes] |
| rs17631610 | 0.92[ASN][1000 genomes] |
| rs2139210 | 0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs28360736 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28435653 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4270546 | 0.92[EUR][1000 genomes] |
| rs4515120 | 0.95[EUR][1000 genomes] |
| rs4691203 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs59998429 | 0.92[EUR][1000 genomes] |
| rs67582214 | 0.93[EUR][1000 genomes] |
| rs6821186 | 0.92[EUR][1000 genomes] |
| rs6830986 | 0.85[EUR][1000 genomes] |
| rs6853763 | 0.85[EUR][1000 genomes] |
| rs6854385 | 0.93[EUR][1000 genomes] |
| rs72705426 | 0.92[ASN][1000 genomes] |
| rs72705432 | 0.92[ASN][1000 genomes] |
| rs7440432 | 0.92[EUR][1000 genomes] |
| rs7672909 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv508327 | chr4:166424440-166475679 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv596052 | chr4:166454826-166488615 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
