Variant report
| Variant | rs28435653 |
|---|---|
| Chromosome Location | chr4:166476820-166476821 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA2 | chr4:166476331-166476875 | HUVEC | blood vessel: | n/a | chr4:166476623-166476633 chr4:166476632-166476648 chr4:166476632-166476648 |
| 2 | FOS | chr4:166476346-166476942 | HUVEC | blood vessel: | n/a | chr4:166476362-166476372 |
| 3 | JUN | chr4:166476509-166476907 | HUVEC | blood vessel: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248327 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10004125 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10011247 | 0.85[EUR][1000 genomes] |
| rs10016914 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10017098 | 0.85[EUR][1000 genomes] |
| rs10020515 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10155080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1320227 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13340296 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17631610 | 0.94[ASN][1000 genomes] |
| rs2139210 | 0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs28360736 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4270546 | 0.92[EUR][1000 genomes] |
| rs4515120 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4691203 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59998429 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs67582214 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6821186 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6830986 | 0.85[EUR][1000 genomes] |
| rs6853763 | 0.85[EUR][1000 genomes] |
| rs6854385 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72705426 | 0.94[ASN][1000 genomes] |
| rs72705432 | 0.94[ASN][1000 genomes] |
| rs7440432 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7672909 | 0.98[ASN][1000 genomes] |
| rs7696979 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596052 | chr4:166454826-166488615 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166475800-166477800 | Enhancers | HUVEC | blood vessel |
