Variant report

Variant	rs13353833
Chromosome Location	chr5:29759198-29759199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10065453	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522268	1.00[CHB][hapmap]
rs1428310	1.00[CHB][hapmap]
rs1428319	1.00[CHB][hapmap]
rs1428320	1.00[CHB][hapmap]
rs1428322	1.00[CHB][hapmap]
rs1428344	1.00[CHB][hapmap]
rs2052839	1.00[CHB][hapmap]
rs2115186	1.00[CHB][hapmap]
rs2914135	1.00[CHB][hapmap]
rs2925527	1.00[CHB][hapmap];0.80[YRI][hapmap];0.94[ASN][1000 genomes]
rs2972785	0.87[ASN][1000 genomes]
rs2972793	0.87[ASN][1000 genomes]
rs4315931	0.87[ASN][1000 genomes]
rs4352612	0.87[ASN][1000 genomes]
rs4416614	0.87[ASN][1000 genomes]
rs4867210	1.00[CHB][hapmap]
rs5025815	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv830244	chr5:29630122-29790611	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv880737	chr5:29704121-29773087	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv880992	chr5:29704121-29779148	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3400079	chr5:29729244-29762382	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29759000-29759200	Active TSS	Liver	Liver
2	chr5:29759000-29759200	Flanking Active TSS	HepG2	liver
3	chr5:29759000-29759600	Enhancers	Fetal Intestine Large	intestine
4	chr5:29759000-29759600	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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