Variant report

Variant	rs2925527
Chromosome Location	chr5:29791659-29791660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:29791639-29791701	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29784571..29787438-chr5:29789979..29792969,3	K562	blood:

Variant related genes	Relation type
ENSG00000250984	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10055234	0.81[ASN][1000 genomes]
rs10065453	0.94[ASN][1000 genomes]
rs10078174	0.81[ASN][1000 genomes]
rs12153594	1.00[CEU][hapmap]
rs12522268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12658641	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13353833	0.94[ASN][1000 genomes]
rs1366309	0.81[ASN][1000 genomes]
rs1428310	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1428313	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs1428319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1428320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1428322	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1428344	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2052839	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2115186	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2914135	1.00[CHB][hapmap]
rs2972785	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972793	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4315931	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4352612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4365853	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4416614	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4493688	0.96[EUR][1000 genomes]
rs4867210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs5025815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450723	0.81[ASN][1000 genomes]
rs6450725	0.81[ASN][1000 genomes]
rs7723603	1.00[CEU][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1029329	chr5:29778216-29805002	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1026460	chr5:29785485-29814309	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv1034228	chr5:29785485-29815868	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1018046	chr5:29785776-29818396	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv1019541	chr5:29786932-29814309	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv1016811	chr5:29786932-29824596	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv462086	chr5:29789231-29794237	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv597759	chr5:29789231-29794237	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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