Variant report

Variant	rs7723603
Chromosome Location	chr5:29853820-29853821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:29853762-29854393	MCF-7	breast:	n/a	n/a
2	GATA3	chr5:29853742-29854320	MCF-7	breast:	n/a	n/a
3	GATA3	chr5:29853685-29854434	MCF-7	breast:	n/a	n/a
4	SIN3AK20	chr5:29853731-29854382	MCF-7	breast:	n/a	n/a
5	TCF7L2	chr5:29853712-29854263	Hela-S3	cervix:	n/a	n/a
6	FOS	chr5:29853783-29854198	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr5:29853667-29854342	Hela-S3	cervix:	n/a	chr5:29854144-29854155
8	STAT3	chr5:29853816-29854295	Hela-S3	cervix:	n/a	chr5:29853868-29853879
9	STAT3	chr5:29853762-29854038	MCF10A-Er-Src	breast:	n/a	chr5:29853868-29853879
10	FOS	chr5:29853814-29854274	MCF10A-Er-Src	breast:	n/a	n/a
11	EP300	chr5:29853670-29854325	Hela-S3	cervix:	n/a	n/a
12	GATA3	chr5:29853775-29854337	MCF-7	breast:	n/a	n/a
13	ZNF217	chr5:29853780-29854290	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29852340..29854743-chr5:29859491..29862426,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249744	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055234	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078174	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153594	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12522268	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13172931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1366309	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428310	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1428313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428319	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1428320	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428322	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1428344	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1978607	1.00[ASW][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[YRI][hapmap]
rs2052839	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2115186	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2914135	1.00[JPT][hapmap]
rs2925527	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs2972785	0.87[ASN][1000 genomes]
rs2972793	0.87[ASN][1000 genomes]
rs4315931	0.87[ASN][1000 genomes]
rs4352612	0.87[ASN][1000 genomes]
rs4416614	0.87[ASN][1000 genomes]
rs4867210	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5025815	0.81[ASN][1000 genomes]
rs6450723	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450725	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29853800-29854400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:29853800-29854400	Enhancers	Hela-S3	cervix

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