Variant report
| Variant | rs2914135 |
|---|---|
| Chromosome Location | chr5:29886704-29886705 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10055234 | 1.00[ASN][1000 genomes] |
| rs10078174 | 1.00[ASN][1000 genomes] |
| rs12153594 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12522268 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13172931 | 0.86[ASN][1000 genomes] |
| rs1366309 | 1.00[ASN][1000 genomes] |
| rs1428310 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1428313 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1428319 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1428320 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1428322 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1428344 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1978607 | 1.00[JPT][hapmap] |
| rs2052839 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2115186 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2925527 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs2972785 | 0.87[ASN][1000 genomes] |
| rs2972793 | 0.87[ASN][1000 genomes] |
| rs4315931 | 0.87[ASN][1000 genomes] |
| rs4352612 | 0.87[ASN][1000 genomes] |
| rs4416614 | 0.87[ASN][1000 genomes] |
| rs4867210 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs5025815 | 0.81[ASN][1000 genomes] |
| rs6450723 | 1.00[ASN][1000 genomes] |
| rs6450725 | 1.00[ASN][1000 genomes] |
| rs7723603 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018779 | chr5:29861138-29937229 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029641 | chr5:29861138-29940871 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2763448 | chr5:29875965-29887070 | Inactive region | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
