Variant report

Variant	rs13376238
Chromosome Location	chr1:172497501-172497502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218692	0.85[AFR][1000 genomes]
rs10218821	0.91[AFR][1000 genomes]
rs12239555	0.96[AFR][1000 genomes]
rs1492902	1.00[MEX][hapmap]
rs16844664	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844666	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2422145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41533551	0.91[AFR][1000 genomes]
rs4338394	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4447017	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4500357	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6658890	0.91[AFR][1000 genomes]
rs6659546	0.91[AFR][1000 genomes]
rs6667977	0.91[AFR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172487800-172499000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:172492600-172499000	Weak transcription	K562	blood
3	chr1:172495800-172500400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:172497000-172498400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links