Variant report

Variant	rs16844669
Chromosome Location	chr1:172487510-172487511
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10218692	0.86[AFR][1000 genomes]
rs10218821	0.92[AFR][1000 genomes]
rs12239555	0.94[AFR][1000 genomes]
rs13376238	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844664	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844666	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2422145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41533551	0.92[AFR][1000 genomes]
rs4338394	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4447017	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4500357	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6658890	0.92[AFR][1000 genomes]
rs6659546	0.92[AFR][1000 genomes]
rs6667977	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947551	chr1:172485154-172490045	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172480800-172487800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:172484400-172487600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:172484600-172487600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:172484600-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:172484800-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:172485200-172488400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:172486200-172487600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:172486200-172488400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:172486600-172487800	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:172487000-172487600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:172487400-172492200	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links