Variant report

Variant	rs16844664
Chromosome Location	chr1:172483463-172483464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10218692	0.86[AFR][1000 genomes]
rs10218821	0.92[AFR][1000 genomes]
rs12239555	0.94[AFR][1000 genomes]
rs13376238	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844666	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2422145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41533551	0.92[AFR][1000 genomes]
rs4338394	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4447017	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4500357	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6658890	0.92[AFR][1000 genomes]
rs6659546	0.92[AFR][1000 genomes]
rs6667977	0.92[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172480800-172487800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:172482400-172484400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:172482400-172484600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:172482800-172483600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:172483200-172483800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr1:172483200-172484200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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