Variant report

Variant	rs13378063
Chromosome Location	chr12:106358509-106358510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507205	1.00[EUR][1000 genomes]
rs11112802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112811	1.00[EUR][1000 genomes]
rs12301159	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311347	1.00[EUR][1000 genomes]
rs12314342	1.00[EUR][1000 genomes]
rs1421450	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17037848	1.00[EUR][1000 genomes]
rs17037959	1.00[EUR][1000 genomes]
rs17037993	1.00[EUR][1000 genomes]
rs17038001	1.00[EUR][1000 genomes]
rs17038024	1.00[EUR][1000 genomes]
rs34404995	1.00[EUR][1000 genomes]
rs41513347	1.00[EUR][1000 genomes]
rs6539236	1.00[EUR][1000 genomes]
rs7135356	1.00[EUR][1000 genomes]
rs7298805	1.00[EUR][1000 genomes]
rs7299337	1.00[EUR][1000 genomes]
rs7312705	1.00[EUR][1000 genomes]
rs73391203	1.00[EUR][1000 genomes]
rs73391208	1.00[EUR][1000 genomes]
rs73391222	1.00[EUR][1000 genomes]
rs744346	1.00[EUR][1000 genomes]
rs744347	1.00[EUR][1000 genomes]
rs7968919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106354400-106358800	Weak transcription	Left Ventricle	heart
2	chr12:106354800-106360000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:106354800-106360600	Weak transcription	Psoas Muscle	Psoas
4	chr12:106355200-106359800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:106355200-106360000	Weak transcription	Right Atrium	heart
6	chr12:106356000-106360800	Weak transcription	Right Ventricle	heart
7	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:106356200-106359200	Weak transcription	Fetal Heart	heart
9	chr12:106356200-106360400	Weak transcription	Aorta	Aorta
10	chr12:106356200-106360800	Weak transcription	NH-A	brain
11	chr12:106356200-106361000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:106356400-106360600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:106356600-106360800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:106356600-106364000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:106356800-106360400	Weak transcription	HSMMtube	muscle
16	chr12:106356800-106363200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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