Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106315778..106318266-chr12:106327212..106330143,3	MCF-7	breast:
2	chr12:106315789..106319466-chr12:106324083..106326577,3	MCF-7	breast:
3	chr12:106315341..106317529-chr12:106329436..106331442,2	MCF-7	breast:
4	chr12:106312750..106314775-chr12:106316398..106318391,2	MCF-7	breast:
5	chr12:106313628..106315997-chr12:106317077..106319893,2	K562	blood:
6	chr12:106316408..106318277-chr12:106532466..106534378,2	MCF-7	breast:
7	chr12:106316278..106317895-chr12:106330750..106333564,2	MCF-7	breast:
8	chr12:106315347..106318864-chr12:106319444..106323334,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507205	1.00[EUR][1000 genomes]
rs11112802	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112811	1.00[EUR][1000 genomes]
rs12301159	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311347	1.00[EUR][1000 genomes]
rs12314342	1.00[EUR][1000 genomes]
rs13378063	1.00[EUR][1000 genomes]
rs1421450	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17037848	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17037959	1.00[EUR][1000 genomes]
rs17037993	1.00[EUR][1000 genomes]
rs17038001	1.00[EUR][1000 genomes]
rs17038024	1.00[EUR][1000 genomes]
rs34404995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41513347	1.00[EUR][1000 genomes]
rs6539236	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7135356	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298805	1.00[EUR][1000 genomes]
rs7299337	1.00[EUR][1000 genomes]
rs7312705	1.00[EUR][1000 genomes]
rs73391208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391222	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744346	1.00[EUR][1000 genomes]
rs744347	1.00[EUR][1000 genomes]
rs7968919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106312600-106317400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:106314600-106324200	Weak transcription	Right Atrium	heart
3	chr12:106315600-106317400	Enhancers	A549	lung
4	chr12:106315800-106317400	Enhancers	HSMM	muscle
5	chr12:106316000-106317400	Enhancers	NH-A	brain
6	chr12:106316800-106320200	Weak transcription	HUVEC	blood vessel
7	chr12:106317000-106317400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr12:106317000-106317400	Flanking Active TSS	HSMMtube	muscle
9	chr12:106317000-106321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:106317000-106321800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:106317000-106327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:106317200-106318000	Weak transcription	Fetal Muscle Leg	muscle
13	chr12:106317200-106318600	Weak transcription	NHEK	skin
14	chr12:106317200-106321800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:106317200-106324200	Weak transcription	Psoas Muscle	Psoas
16	chr12:106317200-106325800	Weak transcription	Fetal Muscle Trunk	muscle

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