Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507205	1.00[EUR][1000 genomes]
rs11112802	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112811	1.00[EUR][1000 genomes]
rs12301159	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311347	1.00[EUR][1000 genomes]
rs12314342	1.00[EUR][1000 genomes]
rs13378063	1.00[EUR][1000 genomes]
rs1421450	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17037848	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17037959	1.00[EUR][1000 genomes]
rs17037993	1.00[EUR][1000 genomes]
rs17038001	1.00[EUR][1000 genomes]
rs17038024	1.00[EUR][1000 genomes]
rs34404995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41513347	1.00[EUR][1000 genomes]
rs6539236	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7135356	0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298805	1.00[EUR][1000 genomes]
rs7299337	1.00[EUR][1000 genomes]
rs7312705	1.00[EUR][1000 genomes]
rs73391203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391222	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744346	1.00[EUR][1000 genomes]
rs744347	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106261400-106273000	Weak transcription	HSMMtube	muscle
2	chr12:106263600-106264000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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