Variant report

Variant	rs7298805
Chromosome Location	chr12:106327276-106327277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106252103..106254778-chr12:106324324..106327304,2	MCF-7	breast:
2	chr12:106290453..106292441-chr12:106325256..106328012,2	MCF-7	breast:
3	chr12:106315778..106318266-chr12:106327212..106330143,3	MCF-7	breast:
4	chr12:106327212..106329801-chr12:106406845..106409273,2	MCF-7	breast:
5	chr12:106319277..106321862-chr12:106325653..106327351,2	MCF-7	breast:
6	chr12:106327102..106328934-chr12:106453566..106455222,2	MCF-7	breast:
7	chr12:106326499..106332666-chr12:106530301..106534417,9	MCF-7	breast:
8	chr12:106320573..106324506-chr12:106327076..106328938,3	MCF-7	breast:
9	chr12:106252576..106257330-chr12:106324880..106330173,10	MCF-7	breast:
10	chr12:106325602..106327976-chr12:106491240..106494183,2	MCF-7	breast:
11	chr12:106322923..106333063-chr12:106528610..106534226,20	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507205	1.00[EUR][1000 genomes]
rs11112802	1.00[EUR][1000 genomes]
rs11112811	1.00[EUR][1000 genomes]
rs12301159	1.00[EUR][1000 genomes]
rs12311347	1.00[EUR][1000 genomes]
rs12314342	1.00[EUR][1000 genomes]
rs13378063	1.00[EUR][1000 genomes]
rs1421450	1.00[EUR][1000 genomes]
rs17037848	1.00[EUR][1000 genomes]
rs17037959	1.00[EUR][1000 genomes]
rs17037993	1.00[EUR][1000 genomes]
rs17038001	1.00[EUR][1000 genomes]
rs17038024	1.00[EUR][1000 genomes]
rs34404995	1.00[EUR][1000 genomes]
rs41513347	1.00[EUR][1000 genomes]
rs6539236	1.00[EUR][1000 genomes]
rs7135356	1.00[EUR][1000 genomes]
rs7299337	1.00[EUR][1000 genomes]
rs7312705	1.00[EUR][1000 genomes]
rs73391203	1.00[EUR][1000 genomes]
rs73391208	1.00[EUR][1000 genomes]
rs73391222	1.00[EUR][1000 genomes]
rs744346	1.00[EUR][1000 genomes]
rs744347	1.00[EUR][1000 genomes]
rs7968919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106317000-106327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:106321200-106327600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:106322200-106327600	Weak transcription	HSMM	muscle
4	chr12:106324400-106327800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:106324400-106327800	Enhancers	NHEK	skin
6	chr12:106324600-106327800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:106324600-106327800	Weak transcription	Brain Substantia Nigra	brain
8	chr12:106324600-106332000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:106324800-106327600	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:106324800-106327800	Weak transcription	Brain Anterior Caudate	brain
11	chr12:106324800-106332200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:106324800-106332400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:106325000-106327600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:106325000-106327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:106325000-106327600	Weak transcription	Psoas Muscle	Psoas
16	chr12:106325000-106327800	Weak transcription	Right Ventricle	heart
17	chr12:106325000-106329000	Weak transcription	Left Ventricle	heart
18	chr12:106325000-106329800	Weak transcription	Right Atrium	heart
19	chr12:106325200-106327600	Weak transcription	A549	lung
20	chr12:106325200-106332400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:106325400-106327400	Weak transcription	Hela-S3	cervix
22	chr12:106325400-106327800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr12:106325400-106336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:106325600-106335200	Enhancers	HMEC	breast
25	chr12:106326200-106327600	Weak transcription	Esophagus	oesophagus
26	chr12:106326200-106327800	Weak transcription	Brain Germinal Matrix	brain
27	chr12:106326400-106327400	Weak transcription	HSMMtube	muscle
28	chr12:106326400-106327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:106326400-106327600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:106326400-106327600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:106326400-106327600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:106326400-106327600	Weak transcription	Fetal Muscle Leg	muscle
33	chr12:106326400-106327600	Weak transcription	Fetal Stomach	stomach
34	chr12:106326400-106327600	Weak transcription	Lung	lung
35	chr12:106326400-106327800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:106326400-106327800	Weak transcription	Fetal Lung	lung
37	chr12:106326400-106328200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr12:106326400-106329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:106326400-106330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr12:106326600-106327600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr12:106326600-106327800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:106326600-106330600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:106326800-106327800	Weak transcription	Brain Angular Gyrus	brain
44	chr12:106326800-106328000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:106327000-106330600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:106327200-106330200	Enhancers	HUVEC	blood vessel
47	chr12:106327200-106331000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr12:106327200-106335000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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