Variant report

Variant	rs17037959
Chromosome Location	chr12:106375820-106375821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507205	1.00[EUR][1000 genomes]
rs11112802	1.00[EUR][1000 genomes]
rs11112811	1.00[EUR][1000 genomes]
rs12301159	1.00[EUR][1000 genomes]
rs12311347	1.00[EUR][1000 genomes]
rs12314342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13378063	1.00[EUR][1000 genomes]
rs1421450	1.00[EUR][1000 genomes]
rs17037848	1.00[EUR][1000 genomes]
rs17037993	1.00[EUR][1000 genomes]
rs17038001	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34404995	1.00[EUR][1000 genomes]
rs41513347	1.00[EUR][1000 genomes]
rs6539236	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7135356	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7298805	1.00[EUR][1000 genomes]
rs7299337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391203	1.00[EUR][1000 genomes]
rs73391208	1.00[EUR][1000 genomes]
rs73391222	1.00[EUR][1000 genomes]
rs744346	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744347	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7968919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106370200-106376600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:106370800-106376800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:106372000-106380800	Weak transcription	Osteobl	bone
5	chr12:106372000-106381600	Weak transcription	NHLF	lung
6	chr12:106372400-106377200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:106372600-106377000	Weak transcription	NH-A	brain
8	chr12:106373000-106376000	Weak transcription	HMEC	breast
9	chr12:106373000-106376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:106373000-106376800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:106373200-106381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:106373600-106376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:106374600-106376000	Weak transcription	Psoas Muscle	Psoas
14	chr12:106374600-106377600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:106374800-106376000	Weak transcription	Right Ventricle	heart
16	chr12:106374800-106376200	Weak transcription	Left Ventricle	heart
17	chr12:106375000-106376000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr12:106375000-106376800	Enhancers	Adipose Nuclei	Adipose
19	chr12:106375000-106377600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:106375200-106376400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr12:106375200-106376400	Weak transcription	Spleen	Spleen
22	chr12:106375200-106377600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr12:106375400-106377000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr12:106375600-106376400	Enhancers	Fetal Lung	lung
25	chr12:106375600-106378400	Enhancers	HSMM	muscle
26	chr12:106375600-106378800	Enhancers	HSMMtube	muscle
27	chr12:106375800-106376200	Enhancers	Fetal Heart	heart
28	chr12:106375800-106376200	Enhancers	Fetal Muscle Leg	muscle
29	chr12:106375800-106376800	Enhancers	Ovary	ovary
30	chr12:106375800-106378400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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