Variant report
| Variant | rs13379011 |
|---|---|
| Chromosome Location | chr13:92582145-92582146 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11486326 | 0.82[YRI][hapmap] |
| rs12184638 | 1.00[TSI][hapmap];0.82[YRI][hapmap] |
| rs1409501 | 1.00[EUR][1000 genomes] |
| rs1409502 | 1.00[EUR][1000 genomes] |
| rs1411743 | 1.00[EUR][1000 genomes] |
| rs16946643 | 1.00[EUR][1000 genomes] |
| rs16946937 | 1.00[EUR][1000 genomes] |
| rs16947035 | 1.00[TSI][hapmap] |
| rs17188283 | 1.00[CHD][hapmap] |
| rs58772509 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58841974 | 1.00[EUR][1000 genomes] |
| rs61049774 | 1.00[EUR][1000 genomes] |
| rs6492566 | 1.00[CHD][hapmap] |
| rs7327372 | 0.84[ASW][hapmap];0.94[LWK][hapmap];0.94[YRI][hapmap] |
| rs7328540 | 0.89[YRI][hapmap] |
| rs7329162 | 1.00[EUR][1000 genomes] |
| rs7329521 | 1.00[TSI][hapmap] |
| rs73620031 | 1.00[EUR][1000 genomes] |
| rs73623542 | 1.00[EUR][1000 genomes] |
| rs7997781 | 1.00[EUR][1000 genomes] |
| rs7999558 | 1.00[TSI][hapmap] |
| rs9301768 | 1.00[TSI][hapmap] |
| rs9583976 | 1.00[TSI][hapmap] |
| rs9583982 | 1.00[TSI][hapmap] |
| rs9583985 | 1.00[TSI][hapmap] |
| rs9589374 | 0.81[YRI][hapmap] |
| rs9589376 | 0.84[ASW][hapmap];0.94[LWK][hapmap];0.94[YRI][hapmap] |
| rs9589388 | 1.00[TSI][hapmap] |
| rs9589404 | 1.00[EUR][1000 genomes] |
| rs9589405 | 1.00[EUR][1000 genomes] |
| rs9589408 | 1.00[EUR][1000 genomes] |
| rs9589421 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378326 | chr13:92445514-92816367 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900883 | chr13:92481236-92602622 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv900884 | chr13:92548841-92595572 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 4 | nsv900885 | chr13:92561714-92621620 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv528318 | chr13:92575622-92607374 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv974114 | chr13:92575980-92586164 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 7 | nsv900886 | chr13:92576149-92626399 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | esv10926 | chr13:92577389-92586920 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
