Variant report
| Variant | rs9583982 |
|---|---|
| Chromosome Location | chr13:92631762-92631763 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12184638 | 1.00[TSI][hapmap] |
| rs12323023 | 0.92[YRI][hapmap] |
| rs13379011 | 1.00[TSI][hapmap] |
| rs1409501 | 1.00[EUR][1000 genomes] |
| rs1409502 | 1.00[EUR][1000 genomes] |
| rs1411741 | 1.00[MEX][hapmap] |
| rs1411743 | 1.00[EUR][1000 genomes] |
| rs16946937 | 1.00[EUR][1000 genomes] |
| rs16947035 | 1.00[TSI][hapmap] |
| rs1998871 | 1.00[MEX][hapmap] |
| rs2352189 | 1.00[YRI][hapmap] |
| rs56906091 | 1.00[EUR][1000 genomes] |
| rs58772509 | 1.00[EUR][1000 genomes] |
| rs58841974 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61049774 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7329521 | 1.00[TSI][hapmap] |
| rs73620031 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73622795 | 1.00[EUR][1000 genomes] |
| rs73623542 | 1.00[EUR][1000 genomes] |
| rs7997781 | 1.00[EUR][1000 genomes] |
| rs7999558 | 1.00[TSI][hapmap] |
| rs9301767 | 1.00[YRI][hapmap] |
| rs9301768 | 1.00[TSI][hapmap] |
| rs9301783 | 1.00[MEX][hapmap] |
| rs9583976 | 1.00[TSI][hapmap] |
| rs9583985 | 0.90[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs9589388 | 0.90[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs9589395 | 1.00[YRI][hapmap] |
| rs9589404 | 1.00[EUR][1000 genomes] |
| rs9589405 | 1.00[EUR][1000 genomes] |
| rs9589408 | 1.00[EUR][1000 genomes] |
| rs9589421 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378326 | chr13:92445514-92816367 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv562722 | chr13:92607374-92733984 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
