Variant report

Variant	rs13390083
Chromosome Location	chr2:209079032-209079033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10189163	1.00[AMR][1000 genomes]
rs10201808	1.00[AMR][1000 genomes]
rs10208129	1.00[AMR][1000 genomes]
rs34368414	1.00[AMR][1000 genomes]
rs55748006	1.00[AMR][1000 genomes]
rs55936323	1.00[AMR][1000 genomes]
rs56077606	1.00[AMR][1000 genomes]
rs56115457	1.00[AMR][1000 genomes]
rs56891045	1.00[AMR][1000 genomes]
rs57608666	1.00[AMR][1000 genomes]
rs58324771	1.00[AMR][1000 genomes]
rs58891474	1.00[AMR][1000 genomes]
rs61370782	1.00[AMR][1000 genomes]
rs61414132	1.00[AMR][1000 genomes]
rs6731047	1.00[AMR][1000 genomes]
rs73983695	1.00[AMR][1000 genomes]
rs73983696	1.00[AMR][1000 genomes]
rs73983698	1.00[AMR][1000 genomes]
rs73983699	1.00[AMR][1000 genomes]
rs73983700	1.00[AMR][1000 genomes]
rs73983701	1.00[AMR][1000 genomes]
rs73983702	1.00[AMR][1000 genomes]
rs73986503	1.00[AMR][1000 genomes]
rs73986504	1.00[AMR][1000 genomes]
rs73986505	1.00[AMR][1000 genomes]
rs73986506	1.00[AMR][1000 genomes]
rs73986507	1.00[AMR][1000 genomes]
rs73986509	1.00[AMR][1000 genomes]
rs73986510	1.00[AMR][1000 genomes]
rs73986511	1.00[AMR][1000 genomes]
rs73986512	1.00[AMR][1000 genomes]
rs7572929	1.00[AMR][1000 genomes]
rs9653334	1.00[AMR][1000 genomes]
rs9677413	1.00[AMR][1000 genomes]
rs9678765	1.00[AMR][1000 genomes]
rs9678918	1.00[AMR][1000 genomes]
rs9679488	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv834517	chr2:209006797-209170269	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv875751	chr2:209042963-209110784	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209062600-209080000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:209077800-209079200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:209077800-209079200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:209078400-209079200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:209078800-209080000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:209078800-209080200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:209079000-209080200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:209079000-209080600	Weak transcription	H9 Cell Line	embryonic stem cell

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