Variant report

Variant	rs34368414
Chromosome Location	chr2:208968820-208968821
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10186630	1.00[AMR][1000 genomes]
rs10189163	1.00[AMR][1000 genomes]
rs10201808	1.00[AMR][1000 genomes]
rs10208129	1.00[AMR][1000 genomes]
rs13390083	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs55748006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936323	1.00[AMR][1000 genomes]
rs56077606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56891045	1.00[AMR][1000 genomes]
rs57608666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58891474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61370782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61414132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6731047	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]
rs73983695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983698	1.00[AMR][1000 genomes]
rs73983699	1.00[AMR][1000 genomes]
rs73983700	1.00[AMR][1000 genomes]
rs73983701	1.00[AMR][1000 genomes]
rs73983702	1.00[AMR][1000 genomes]
rs73986503	1.00[AMR][1000 genomes]
rs73986504	1.00[AMR][1000 genomes]
rs73986505	1.00[AMR][1000 genomes]
rs73986506	1.00[AMR][1000 genomes]
rs73986507	1.00[AMR][1000 genomes]
rs73986509	1.00[AMR][1000 genomes]
rs73986510	1.00[AMR][1000 genomes]
rs73986511	1.00[AMR][1000 genomes]
rs73986512	1.00[AMR][1000 genomes]
rs7572929	1.00[AMR][1000 genomes]
rs9653334	1.00[AMR][1000 genomes]
rs9677413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9678765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9678918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9679488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208965000-208976600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:208967400-208972000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:208967400-208976800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:208968600-208969000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:208968600-208969400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:208968600-208969400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:208968600-208970600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:208968600-208972000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:208968800-208969200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links