Variant report

Variant	rs73983700
Chromosome Location	chr2:208977528-208977529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr2:208977381-208978302	MCF-7	breast:	n/a	n/a
2	GATA3	chr2:208977518-208978320	MCF-7	breast:	n/a	chr2:208977894-208977901
3	GTF2F1	chr2:208977428-208977977	H1-hESC	embryonic stem cell:	n/a	n/a
4	SIN3AK20	chr2:208977466-208978258	MCF-7	breast:	n/a	n/a
5	GATA3	chr2:208977479-208978321	MCF-7	breast:	n/a	chr2:208977894-208977901

Variant related genes	Relation type
CRYGEP	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10186630	1.00[AMR][1000 genomes]
rs10189163	1.00[AMR][1000 genomes]
rs10201808	1.00[AMR][1000 genomes]
rs10208129	1.00[AMR][1000 genomes]
rs13390083	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs34368414	1.00[AMR][1000 genomes]
rs55748006	1.00[AMR][1000 genomes]
rs55936323	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56077606	1.00[AMR][1000 genomes]
rs56115457	1.00[AMR][1000 genomes]
rs56891045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57608666	1.00[AMR][1000 genomes]
rs58324771	1.00[AMR][1000 genomes]
rs58891474	1.00[AMR][1000 genomes]
rs61370782	1.00[AMR][1000 genomes]
rs61414132	1.00[AMR][1000 genomes]
rs6731047	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]
rs73983695	1.00[AMR][1000 genomes]
rs73983696	1.00[AMR][1000 genomes]
rs73983698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983699	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7572929	1.00[AMR][1000 genomes]
rs9653334	1.00[AMR][1000 genomes]
rs9677413	1.00[AMR][1000 genomes]
rs9678765	1.00[AMR][1000 genomes]
rs9678918	1.00[AMR][1000 genomes]
rs9679488	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv875745	chr2:208969865-208994045	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875746	chr2:208971007-208989708	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3443711	chr2:208977244-208989245	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208973200-208989000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:208976200-208977600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:208976600-208978000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:208976800-208977600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr2:208976800-208977600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:208976800-208977600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:208977000-208977600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr2:208977000-208977600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:208977000-208977600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
10	chr2:208977000-208977600	Active TSS	Right Atrium	heart
11	chr2:208977000-208977800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:208977200-208977600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr2:208977200-208977600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:208977200-208977600	Bivalent Enhancer	Fetal Brain Male	brain
15	chr2:208977200-208977600	Active TSS	Fetal Brain Female	brain
16	chr2:208977200-208977800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr2:208977200-208977800	Bivalent Enhancer	Fetal Lung	lung
18	chr2:208977200-208978000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr2:208977200-208978000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:208977200-208978000	Enhancers	Gastric	stomach
21	chr2:208977200-208978600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:208977400-208977600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:208977400-208977600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:208977400-208977600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:208977400-208977600	Bivalent Enhancer	Adipose Nuclei	Adipose
26	chr2:208977400-208977600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
27	chr2:208977400-208977600	Active TSS	Ovary	ovary
28	chr2:208977400-208978000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:208977400-208978000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:208977400-208978000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr2:208977400-208978200	Enhancers	Fetal Intestine Small	intestine
32	chr2:208977400-208978400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr2:208977400-208978600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:208977400-208978600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr2:208977400-208978600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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