Variant report

Variant	rs58891474
Chromosome Location	chr2:208976363-208976364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10186630	1.00[AMR][1000 genomes]
rs10189163	1.00[AMR][1000 genomes]
rs10201808	1.00[AMR][1000 genomes]
rs10208129	1.00[AMR][1000 genomes]
rs13390083	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs34368414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55748006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936323	1.00[AMR][1000 genomes]
rs56077606	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56891045	1.00[AMR][1000 genomes]
rs57608666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61370782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61414132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6731047	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]
rs73983695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983698	1.00[AMR][1000 genomes]
rs73983699	1.00[AMR][1000 genomes]
rs73983700	1.00[AMR][1000 genomes]
rs73983701	1.00[AMR][1000 genomes]
rs73983702	1.00[AMR][1000 genomes]
rs73986503	1.00[AMR][1000 genomes]
rs73986504	1.00[AMR][1000 genomes]
rs73986505	1.00[AMR][1000 genomes]
rs73986506	1.00[AMR][1000 genomes]
rs73986507	1.00[AMR][1000 genomes]
rs73986509	1.00[AMR][1000 genomes]
rs73986510	1.00[AMR][1000 genomes]
rs73986511	1.00[AMR][1000 genomes]
rs73986512	1.00[AMR][1000 genomes]
rs7572929	1.00[AMR][1000 genomes]
rs9653334	1.00[AMR][1000 genomes]
rs9677413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9678765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9678918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9679488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv875745	chr2:208969865-208994045	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875746	chr2:208971007-208989708	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208965000-208976600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:208967400-208976800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:208969400-208976600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:208972600-208976600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:208973200-208976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:208973200-208976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:208973200-208989000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:208975600-208976400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:208976200-208976400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr2:208976200-208976400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr2:208976200-208976400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr2:208976200-208976600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:208976200-208977600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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