Variant report

Variant	rs6731047
Chromosome Location	chr2:208953461-208953462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10186630	1.00[AMR][1000 genomes]
rs10189163	1.00[AMR][1000 genomes]
rs10192860	0.81[AFR][1000 genomes]
rs10201808	1.00[AMR][1000 genomes]
rs10208129	1.00[AMR][1000 genomes]
rs13390083	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs34368414	1.00[AMR][1000 genomes]
rs55748006	1.00[AMR][1000 genomes]
rs55936323	1.00[AMR][1000 genomes]
rs56077606	1.00[AMR][1000 genomes]
rs56115457	1.00[AMR][1000 genomes]
rs56891045	1.00[AMR][1000 genomes]
rs57608666	1.00[AMR][1000 genomes]
rs58324771	1.00[AMR][1000 genomes]
rs58891474	1.00[AMR][1000 genomes]
rs61370782	1.00[AMR][1000 genomes]
rs61414132	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]
rs73983695	1.00[AMR][1000 genomes]
rs73983696	1.00[AMR][1000 genomes]
rs73983698	1.00[AMR][1000 genomes]
rs73983699	1.00[AMR][1000 genomes]
rs73983700	1.00[AMR][1000 genomes]
rs73983701	1.00[AMR][1000 genomes]
rs73983702	1.00[AMR][1000 genomes]
rs73986503	1.00[AMR][1000 genomes]
rs73986504	1.00[AMR][1000 genomes]
rs73986505	1.00[AMR][1000 genomes]
rs73986506	1.00[AMR][1000 genomes]
rs73986507	1.00[AMR][1000 genomes]
rs73986509	1.00[AMR][1000 genomes]
rs73986510	1.00[AMR][1000 genomes]
rs73986511	1.00[AMR][1000 genomes]
rs73986512	1.00[AMR][1000 genomes]
rs7572929	1.00[AMR][1000 genomes]
rs9653334	1.00[AMR][1000 genomes]
rs9677413	1.00[AMR][1000 genomes]
rs9678765	1.00[AMR][1000 genomes]
rs9678918	1.00[AMR][1000 genomes]
rs9679488	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208951600-208957800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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