Variant report

Variant	rs1340595
Chromosome Location	chr1:84925315-84925316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84923797..84925779-chr1:84971517..84974315,2	K562	blood:

Variant related genes	Relation type
ENSG00000122432	Chromatin interaction
ENSG00000174021	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11163955	0.81[ASN][1000 genomes]
rs11163957	0.81[ASN][1000 genomes]
rs11163958	0.82[ASN][1000 genomes]
rs11163959	0.82[ASN][1000 genomes]
rs11163960	0.82[ASN][1000 genomes]
rs11163963	0.82[ASN][1000 genomes]
rs11578928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12029581	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12029668	0.81[ASN][1000 genomes]
rs12030472	0.82[ASN][1000 genomes]
rs12032962	0.88[ASN][1000 genomes]
rs12034438	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12036961	0.82[ASN][1000 genomes]
rs12042338	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246392	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12740453	0.81[ASN][1000 genomes]
rs1506699	0.81[ASN][1000 genomes]
rs1506700	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs1981254	0.90[CHB][hapmap]
rs1995643	0.82[ASN][1000 genomes]
rs2063037	0.88[ASN][1000 genomes]
rs2066197	0.91[ASN][1000 genomes]
rs2104210	0.81[ASN][1000 genomes]
rs2185486	0.81[ASN][1000 genomes]
rs2389723	0.81[ASN][1000 genomes]
rs3116415	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs3116433	0.81[ASN][1000 genomes]
rs3116435	0.81[ASN][1000 genomes]
rs3121147	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs35459071	0.81[ASN][1000 genomes]
rs3768253	0.81[ASN][1000 genomes]
rs3813608	0.81[JPT][hapmap]
rs472601	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4907063	0.81[ASN][1000 genomes]
rs4907064	0.81[ASN][1000 genomes]
rs4907070	0.89[ASN][1000 genomes]
rs507772	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs553775	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs601564	0.91[CHB][hapmap]
rs6576700	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6576701	0.81[ASN][1000 genomes]
rs6576702	0.81[ASN][1000 genomes]
rs6576708	0.88[ASN][1000 genomes]
rs6663802	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs679725	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs925014	0.88[ASN][1000 genomes]
rs937840	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84924600-84925800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr1:84924600-84926600	Enhancers	Primary monocytes fromperipheralblood	blood

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