Variant report

Variant	rs937840
Chromosome Location	chr1:84890072-84890073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84884512..84886261-chr1:84889653..84891562,2	K562	blood:
2	chr1:84888633..84891010-chr1:84899091..84900892,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11163955	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163957	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11163958	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163963	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578928	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs12027418	0.83[CEU][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12029581	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029668	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12030472	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032962	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034438	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12036961	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12042338	0.82[ASN][1000 genomes]
rs12123671	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1246386	0.87[JPT][hapmap]
rs1246392	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12740453	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1340595	0.90[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1506699	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1506700	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542963	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131659	0.86[JPT][hapmap]
rs1971350	0.90[ASN][1000 genomes]
rs1981254	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1995643	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063037	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066197	0.91[ASN][1000 genomes]
rs2104210	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2185486	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389723	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3116415	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3116433	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3116435	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3117747	0.88[JPT][hapmap]
rs3121147	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35459071	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3768253	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3813608	0.94[JPT][hapmap]
rs3956461	0.87[JPT][hapmap]
rs472601	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4907063	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4907064	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4907070	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs507772	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs511339	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs528310	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs553775	1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs601564	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6576700	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6576701	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6576702	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6576708	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6663802	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs676987	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs679725	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs925014	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84881600-84893000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:84889000-84893000	Weak transcription	HMEC	breast
3	chr1:84889000-84893200	Weak transcription	NHEK	skin
4	chr1:84889200-84893400	Weak transcription	Stomach Mucosa	stomach

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