Variant report

Variant	rs11163955
Chromosome Location	chr1:84879895-84879896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84871504..84874028-chr1:84877605..84880446,2	K562	blood:

Variant related genes	Relation type
ENSG00000137976	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11163957	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163958	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163959	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163960	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163963	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12027418	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12029581	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12029668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030472	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12032962	0.87[ASN][1000 genomes]
rs12034438	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12036961	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042338	0.81[ASN][1000 genomes]
rs12123671	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1246392	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12740453	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340595	0.81[ASN][1000 genomes]
rs1506699	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1506700	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542963	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1971350	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1981254	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995643	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063037	0.87[ASN][1000 genomes]
rs2066197	0.90[ASN][1000 genomes]
rs2104210	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2185486	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2389723	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3116415	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3116433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3116435	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3121147	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35459071	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3768253	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472601	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4907063	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4907064	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4907070	0.89[ASN][1000 genomes]
rs507772	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs511339	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs528310	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs553775	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs601564	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6576700	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576701	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6576702	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576708	0.87[ASN][1000 genomes]
rs6663802	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs676987	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs679725	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs925014	0.87[ASN][1000 genomes]
rs937840	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84877000-84880200	Weak transcription	HUVEC	blood vessel
2	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
3	chr1:84878800-84880800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:84879000-84880400	Weak transcription	NH-A	brain
5	chr1:84879200-84881000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:84879200-84881000	Weak transcription	Osteobl	bone

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