Variant report

Variant	rs1971350
Chromosome Location	chr1:84886897-84886898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84886211..84887078-chr1:85070133..85071055,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11163955	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11163957	0.91[ASN][1000 genomes]
rs11163958	0.90[ASN][1000 genomes]
rs11163959	0.90[ASN][1000 genomes]
rs11163960	0.90[ASN][1000 genomes]
rs11163963	0.90[ASN][1000 genomes]
rs12027418	0.84[ASN][1000 genomes]
rs12029581	0.88[ASN][1000 genomes]
rs12029668	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12030472	0.90[ASN][1000 genomes]
rs12032962	0.84[ASN][1000 genomes]
rs12034438	0.88[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12036961	0.90[ASN][1000 genomes]
rs12123671	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1246392	0.92[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12740453	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1506699	0.86[ASN][1000 genomes]
rs1506700	0.92[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542963	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981254	0.92[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995643	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2063037	0.84[ASN][1000 genomes]
rs2066197	0.82[ASN][1000 genomes]
rs2104210	0.86[ASN][1000 genomes]
rs2185486	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2389723	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3116415	0.81[CEU][hapmap];0.88[ASN][1000 genomes]
rs3116433	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3116435	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3121147	0.92[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35459071	0.91[ASN][1000 genomes]
rs3768253	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs472601	0.92[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4907063	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4907064	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4907070	0.80[ASN][1000 genomes]
rs507772	0.92[CEU][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs511339	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs528310	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs553775	0.95[CEU][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs601564	0.91[CEU][hapmap];0.87[YRI][hapmap];0.82[ASN][1000 genomes]
rs6576700	0.92[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6576701	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6576702	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6576708	0.84[ASN][1000 genomes]
rs6663802	0.91[CEU][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs676987	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679725	0.92[CEU][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs925014	0.84[ASN][1000 genomes]
rs937840	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv160630	chr1:84886869-84886898	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84881600-84893000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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