Variant report

Variant	rs676987
Chromosome Location	chr1:84873190-84873191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:84873122-84873750	MCF-7	breast:	n/a	chr1:84873259-84873269 chr1:84873589-84873599
2	JUND	chr1:84873172-84873626	T-47D	breast:	n/a	chr1:84873259-84873273
3	EP300	chr1:84873148-84873626	T-47D	breast:	n/a	n/a
4	GATA3	chr1:84873128-84874019	T-47D	breast:	n/a	chr1:84873259-84873269 chr1:84873589-84873599 chr1:84873765-84873775

Variant related genes	Relation type
DNASE2B	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11163955	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11163957	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163958	0.91[ASN][1000 genomes]
rs11163959	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163960	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163963	0.91[ASN][1000 genomes]
rs12027418	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029581	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12029668	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12030472	0.91[ASN][1000 genomes]
rs12032962	0.85[ASN][1000 genomes]
rs12034438	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12036961	0.91[ASN][1000 genomes]
rs12123671	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1246392	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12740453	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1506699	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542963	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1971350	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1981254	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995643	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2063037	0.85[ASN][1000 genomes]
rs2066197	0.87[ASN][1000 genomes]
rs2104210	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2185486	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2389723	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3116415	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3116433	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3116435	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3121147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35459071	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768253	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs472601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4907063	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4907064	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4907070	0.86[ASN][1000 genomes]
rs507772	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528310	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs553775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs601564	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6576700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6576701	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6576702	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6576708	0.85[ASN][1000 genomes]
rs6663802	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679725	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs925014	0.85[ASN][1000 genomes]
rs937840	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84869600-84873600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:84869800-84873400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:84870200-84874200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:84871000-84874400	Enhancers	Fetal Intestine Large	intestine
5	chr1:84871200-84874200	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:84871200-84874400	Enhancers	Fetal Intestine Small	intestine
7	chr1:84871400-84873600	Weak transcription	Colonic Mucosa	Colon
8	chr1:84872000-84873200	Enhancers	Osteobl	bone
9	chr1:84872000-84873600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr1:84872000-84874400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:84872000-84876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:84872200-84874200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:84872200-84874400	Enhancers	Stomach Mucosa	stomach
14	chr1:84872400-84873600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:84872400-84875000	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:84872400-84876800	Weak transcription	Gastric	stomach
17	chr1:84872800-84873200	Weak transcription	HUVEC	blood vessel
18	chr1:84872800-84874000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr1:84873000-84874000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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