Variant report

Variant	rs2063037
Chromosome Location	chr1:84905725-84905726
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84902465..84904153-chr1:84904370..84905923,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11163955	0.87[ASN][1000 genomes]
rs11163957	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11163958	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163959	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163960	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163963	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11578928	0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12027418	0.95[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12029581	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12029668	0.87[ASN][1000 genomes]
rs12030472	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12032962	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034438	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12036961	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042338	0.88[ASN][1000 genomes]
rs12123671	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1246392	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12740453	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1340595	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1506699	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506700	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1542963	0.90[ASN][1000 genomes]
rs1971350	0.84[ASN][1000 genomes]
rs1981254	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1995643	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066197	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2104210	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2185486	0.87[ASN][1000 genomes]
rs2389723	0.87[ASN][1000 genomes]
rs3116415	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3116433	0.87[ASN][1000 genomes]
rs3116435	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3117747	0.81[JPT][hapmap]
rs3121147	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs35459071	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768253	0.87[ASN][1000 genomes]
rs3813608	0.91[JPT][hapmap]
rs472601	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4907063	0.87[ASN][1000 genomes]
rs4907064	0.87[ASN][1000 genomes]
rs4907070	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs507772	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs511339	0.85[ASN][1000 genomes]
rs528310	0.83[ASN][1000 genomes]
rs553775	0.89[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs601564	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6576700	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6576701	0.87[ASN][1000 genomes]
rs6576702	0.87[ASN][1000 genomes]
rs6576708	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663802	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs676987	0.85[ASN][1000 genomes]
rs679725	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs925014	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937840	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
3	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:84901200-84908800	Weak transcription	NHLF	lung
6	chr1:84901400-84907400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:84901400-84907600	Weak transcription	Dnd41	blood
8	chr1:84901600-84908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:84902000-84908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84902800-84908000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:84903400-84908200	Weak transcription	GM12878-XiMat	blood
12	chr1:84903800-84907800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:84903800-84908200	Weak transcription	Primary B cells from cord blood	blood
14	chr1:84903800-84908200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:84903800-84908400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:84903800-84908400	Weak transcription	Fetal Thymus	thymus
17	chr1:84903800-84908600	Weak transcription	Thymus	Thymus
18	chr1:84904000-84907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:84904000-84907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:84904000-84907800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:84904000-84907800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:84904000-84908000	Weak transcription	Primary T cells from cord blood	blood
23	chr1:84904000-84908200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr1:84904000-84908200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:84904000-84908200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:84904000-84908600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:84904200-84907600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:84904600-84907800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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