Variant report

Variant	rs1340598
Chromosome Location	chr1:84904099-84904100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84902465..84904153-chr1:84904370..84905923,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10493746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874441	0.91[ASN][1000 genomes]
rs12755232	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506702	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1506703	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131698	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131707	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911156	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1959757	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1959758	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2008711	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389742	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3116406	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34519183	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34760754	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35779335	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3738573	0.82[JPT][hapmap]
rs3768250	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3768256	0.82[JPT][hapmap]
rs4345821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907066	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61766293	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61766294	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633294	0.82[JPT][hapmap]
rs634531	0.86[JPT][hapmap]
rs6701340	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514800	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515554	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7538902	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540794	0.80[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7549128	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs959363	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
3	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:84901200-84908800	Weak transcription	NHLF	lung
6	chr1:84901400-84907400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:84901400-84907600	Weak transcription	Dnd41	blood
8	chr1:84901600-84908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:84902000-84908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84902800-84908000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:84903400-84904200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:84903400-84908200	Weak transcription	GM12878-XiMat	blood
13	chr1:84903600-84904600	Weak transcription	Fetal Brain Male	brain
14	chr1:84903800-84904200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:84903800-84904600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:84903800-84907800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:84903800-84908200	Weak transcription	Primary B cells from cord blood	blood
18	chr1:84903800-84908200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:84903800-84908400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:84903800-84908400	Weak transcription	Fetal Thymus	thymus
21	chr1:84903800-84908600	Weak transcription	Thymus	Thymus
22	chr1:84904000-84907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:84904000-84907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:84904000-84907800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:84904000-84907800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:84904000-84908000	Weak transcription	Primary T cells from cord blood	blood
27	chr1:84904000-84908200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr1:84904000-84908200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:84904000-84908200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr1:84904000-84908600	Weak transcription	Primary hematopoietic stem cells	blood

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