Variant report

Variant	rs61766293
Chromosome Location	chr1:84909430-84909431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84907601..84909652-chr1:85039364..85041432,2	K562	blood:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493746	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874441	0.91[ASN][1000 genomes]
rs12755232	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1340598	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506702	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1506703	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131698	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131701	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131702	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131707	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827939	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911156	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1959757	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1959758	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2008711	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105267	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389742	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3116406	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34519183	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34760754	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35779335	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3768250	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4345821	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907066	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61766294	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701340	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514800	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515554	0.83[AMR][1000 genomes]
rs7538902	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540794	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7549128	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs959363	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84907400-84909600	Enhancers	Duodenum Mucosa	Duodenum
2	chr1:84907600-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:84907800-84909600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:84907800-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:84907800-84909800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr1:84908000-84909600	Enhancers	Primary T cells from cord blood	blood
7	chr1:84908200-84909600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:84908200-84909600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:84908200-84909600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:84908200-84909800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:84908200-84909800	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:84908400-84909600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:84908400-84909600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:84908400-84909600	Enhancers	Fetal Thymus	thymus
15	chr1:84908400-84909600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:84908600-84909600	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:84909000-84912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:84909400-84909600	Enhancers	Rectal Mucosa Donor 29	rectum

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