Variant report

Variant	rs4345821
Chromosome Location	chr1:84907970-84907971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84907660..84908164-chr1:85219171..85219900,2	MCF-7	breast:
2	chr1:84907601..84909652-chr1:85039364..85041432,2	K562	blood:
3	chr1:84907597..84908564-chr1:85069976..85070920,6	K562	blood:
4	chr1:84907591..84908130-chr1:85086306..85086828,2	MCF-7	breast:
5	chr1:84907633..84908606-chr1:85086107..85087004,6	MCF-7	breast:
6	chr1:84907802..84908723-chr1:85007580..85008290,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10493746	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874441	0.91[ASN][1000 genomes]
rs12755232	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1340598	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506702	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1506703	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131698	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131701	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131702	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131707	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827939	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911156	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1959757	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1959758	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2008711	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105267	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389742	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3116406	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34519183	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34760754	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35779335	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3738573	0.82[JPT][hapmap]
rs3768250	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3768256	0.82[JPT][hapmap]
rs4907066	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61766293	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61766294	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633294	0.82[JPT][hapmap]
rs634531	0.86[JPT][hapmap]
rs6701340	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514800	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515554	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7538902	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540794	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7549128	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs959363	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
2	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:84901200-84908800	Weak transcription	NHLF	lung
4	chr1:84901600-84908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:84902000-84908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:84902800-84908000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:84903400-84908200	Weak transcription	GM12878-XiMat	blood
8	chr1:84903800-84908200	Weak transcription	Primary B cells from cord blood	blood
9	chr1:84903800-84908200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr1:84903800-84908400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:84903800-84908400	Weak transcription	Fetal Thymus	thymus
12	chr1:84903800-84908600	Weak transcription	Thymus	Thymus
13	chr1:84904000-84908000	Weak transcription	Primary T cells from cord blood	blood
14	chr1:84904000-84908200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:84904000-84908200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:84904000-84908200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:84904000-84908600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:84907400-84909600	Enhancers	Duodenum Mucosa	Duodenum
19	chr1:84907600-84909200	Enhancers	Dnd41	blood
20	chr1:84907600-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:84907800-84908400	Enhancers	HSMM	muscle
22	chr1:84907800-84908800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:84907800-84908800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr1:84907800-84908800	Enhancers	HMEC	breast
25	chr1:84907800-84908800	Enhancers	NHEK	skin
26	chr1:84907800-84909200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:84907800-84909200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr1:84907800-84909200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr1:84907800-84909200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:84907800-84909200	Enhancers	NHDF-Ad	bronchial
31	chr1:84907800-84909400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr1:84907800-84909400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:84907800-84909600	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr1:84907800-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:84907800-84909800	Enhancers	Primary T helper cells PMA-I stimulated	--

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