The 2.0 version of rSNPBase

Variant report

Variant rs17131701
Chromosome Location chr1:84901501-84901502
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84893400-84902400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:84898400-84903000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:84899600-84901600 Enhancers GM12878-XiMat blood
4 chr1:84899600-84901800 Weak transcription Fetal Brain Male brain
5 chr1:84899600-84901800 Enhancers Thymus Thymus
6 chr1:84899600-84902200 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr1:84899600-84902400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr1:84899600-84902400 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr1:84899600-84902400 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:84899600-84902400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:84899600-84902600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:84899600-84902600 Weak transcription Adipose Nuclei Adipose
13 chr1:84899600-84902800 Weak transcription Fetal Thymus thymus
14 chr1:84899600-84903000 Weak transcription Brain Angular Gyrus brain
15 chr1:84899600-84903200 Enhancers Primary B cells from peripheral blood blood
16 chr1:84899600-84907800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:84899600-84908200 Weak transcription Stomach Mucosa stomach
18 chr1:84899600-84908400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:84899800-84901600 Enhancers Primary T regulatory cells fromperipheralblood blood
20 chr1:84899800-84907800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:84900000-84902600 Weak transcription Brain Substantia Nigra brain
22 chr1:84900000-84902800 Weak transcription Fetal Brain Female brain
23 chr1:84900000-84903000 Weak transcription Aorta Aorta
24 chr1:84900400-84901600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
25 chr1:84900400-84901800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
26 chr1:84900400-84901800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:84900400-84901800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
28 chr1:84900600-84901600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
29 chr1:84900600-84901600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:84900600-84901600 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
31 chr1:84900600-84901800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
32 chr1:84900600-84903000 Enhancers Primary B cells from cord blood blood
33 chr1:84901000-84901800 Flanking Active TSS Primary T helper cells fromperipheralblood blood
34 chr1:84901000-84901800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:84901000-84902200 Weak transcription Brain Cingulate Gyrus brain
36 chr1:84901200-84901600 Enhancers Brain Hippocampus Middle brain
37 chr1:84901200-84901800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
38 chr1:84901200-84902200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
39 chr1:84901200-84902800 Enhancers Primary hematopoietic stem cells short term culture blood
40 chr1:84901200-84903000 Weak transcription Primary neutrophils fromperipheralblood blood
41 chr1:84901200-84903000 Enhancers Primary hematopoietic stem cells blood
42 chr1:84901200-84903800 Enhancers Brain Anterior Caudate brain
43 chr1:84901200-84908800 Weak transcription NHLF lung
44 chr1:84901400-84901600 Flanking Active TSS Primary T cells from cord blood blood
45 chr1:84901400-84901600 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr1:84901400-84901600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:84901400-84902200 Enhancers Primary T cells fromperipheralblood blood
48 chr1:84901400-84902600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:84901400-84903000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:84901400-84903200 Enhancers Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015