Variant report

Variant	rs17131698
Chromosome Location	chr1:84899905-84899906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84606627..84607493-chr1:84899132..84900125,4	MCF-7	breast:
2	chr1:84888633..84891010-chr1:84899091..84900892,2	K562	blood:
3	chr1:84894566..84897091-chr1:84898003..84900258,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493746	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10874441	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12755232	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1340598	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1506702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1506703	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131701	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131702	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131707	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1827939	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1911156	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1959757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1959758	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008711	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2105267	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389742	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3116406	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34519183	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34760754	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35779335	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768250	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4345821	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4907066	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61766293	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61766294	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6701340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515554	0.82[AMR][1000 genomes]
rs7538902	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540794	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7549128	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs959363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84893400-84902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:84898400-84903000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84899000-84900400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:84899000-84900400	Enhancers	Hela-S3	cervix
5	chr1:84899000-84900600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:84899000-84901000	Enhancers	HMEC	breast
7	chr1:84899200-84901200	Enhancers	NHEK	skin
8	chr1:84899400-84900000	Active TSS	Aorta	Aorta
9	chr1:84899400-84901000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84899600-84900000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:84899600-84900000	Enhancers	Fetal Brain Female	brain
12	chr1:84899600-84900000	Enhancers	HUVEC	blood vessel
13	chr1:84899600-84900000	Enhancers	NH-A	brain
14	chr1:84899600-84900000	Enhancers	NHLF	lung
15	chr1:84899600-84900200	Enhancers	Liver	Liver
16	chr1:84899600-84900400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:84899600-84900400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:84899600-84900400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:84899600-84900400	Weak transcription	NHDF-Ad	bronchial
20	chr1:84899600-84900400	Weak transcription	Osteobl	bone
21	chr1:84899600-84900600	Weak transcription	Primary B cells from cord blood	blood
22	chr1:84899600-84900600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr1:84899600-84900600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:84899600-84900600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:84899600-84900600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr1:84899600-84900600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:84899600-84900800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:84899600-84900800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr1:84899600-84900800	Enhancers	Primary hematopoietic stem cells	blood
30	chr1:84899600-84900800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr1:84899600-84900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:84899600-84900800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:84899600-84901000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr1:84899600-84901200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:84899600-84901600	Enhancers	GM12878-XiMat	blood
36	chr1:84899600-84901800	Weak transcription	Fetal Brain Male	brain
37	chr1:84899600-84901800	Enhancers	Thymus	Thymus
38	chr1:84899600-84902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:84899600-84902400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:84899600-84902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr1:84899600-84902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:84899600-84902400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:84899600-84902600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:84899600-84902600	Weak transcription	Adipose Nuclei	Adipose
45	chr1:84899600-84902800	Weak transcription	Fetal Thymus	thymus
46	chr1:84899600-84903000	Weak transcription	Brain Angular Gyrus	brain
47	chr1:84899600-84903200	Enhancers	Primary B cells from peripheral blood	blood
48	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
50	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum

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