The 2.0 version of rSNPBase

Variant report

Variant rs13411566
Chromosome Location chr2:231299565-231299566
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:231283600-231309200 Weak transcription Stomach Smooth Muscle stomach
2 chr2:231284200-231301000 Weak transcription Rectal Smooth Muscle rectum
3 chr2:231284200-231304000 Weak transcription NH-A brain
4 chr2:231284600-231306200 Weak transcription HMEC breast
5 chr2:231288800-231319000 Weak transcription Fetal Kidney kidney
6 chr2:231288800-231356000 Weak transcription Stomach Mucosa stomach
7 chr2:231289000-231309200 Weak transcription Aorta Aorta
8 chr2:231291200-231299600 Weak transcription NHEK skin
9 chr2:231294000-231300400 Weak transcription HUVEC blood vessel
10 chr2:231294000-231301200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr2:231294200-231309600 Weak transcription Placenta Amnion Placenta Amnion
12 chr2:231294200-231311600 Weak transcription Colon Smooth Muscle Colon
13 chr2:231294800-231299800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr2:231295200-231301000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr2:231295200-231309200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr2:231295400-231300800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr2:231295400-231306400 Weak transcription HSMM muscle
18 chr2:231295600-231299800 Weak transcription Muscle Satellite Cultured Cells --
19 chr2:231295600-231301000 Weak transcription Placenta Placenta
20 chr2:231295800-231307800 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr2:231295800-231309000 Weak transcription Small Intestine intestine
22 chr2:231296000-231300200 Weak transcription Liver Liver
23 chr2:231296000-231300400 Weak transcription Pancreas Pancrea
24 chr2:231296000-231300400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr2:231296000-231309400 Weak transcription Colonic Mucosa Colon
26 chr2:231296000-231310400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr2:231296200-231300200 Weak transcription Fetal Thymus thymus
28 chr2:231296200-231300400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr2:231296200-231300400 Weak transcription Fetal Intestine Small intestine
30 chr2:231296200-231300400 Weak transcription Left Ventricle heart
31 chr2:231296200-231300400 Weak transcription Thymus Thymus
32 chr2:231296200-231301200 Weak transcription Lung lung
33 chr2:231296200-231301200 Weak transcription Ovary ovary
34 chr2:231296200-231308400 Weak transcription Gastric stomach
35 chr2:231296200-231309200 Weak transcription Fetal Stomach stomach
36 chr2:231296200-231309200 Weak transcription Spleen Spleen
37 chr2:231296400-231300200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr2:231296400-231300200 Weak transcription Fetal Muscle Leg muscle
39 chr2:231296400-231300400 Weak transcription Primary monocytes fromperipheralblood blood
40 chr2:231296400-231300600 Weak transcription Duodenum Mucosa Duodenum
41 chr2:231296400-231307600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr2:231296600-231300600 Weak transcription Primary T cells from cord blood blood
43 chr2:231296600-231303800 ZNF genes & repeats GM12878-XiMat blood
44 chr2:231296800-231300200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr2:231296800-231300600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr2:231296800-231301000 Weak transcription Adipose Nuclei Adipose
47 chr2:231297200-231300400 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr2:231298000-231300400 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr2:231298000-231301000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr2:231298200-231299800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015