The 2.0 version of rSNPBase

Variant report

Variant rs6748062
Chromosome Location chr2:231295172-231295173
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:231283600-231309200 Weak transcription Stomach Smooth Muscle stomach
2 chr2:231284200-231301000 Weak transcription Rectal Smooth Muscle rectum
3 chr2:231284200-231304000 Weak transcription NH-A brain
4 chr2:231284600-231306200 Weak transcription HMEC breast
5 chr2:231288800-231319000 Weak transcription Fetal Kidney kidney
6 chr2:231288800-231356000 Weak transcription Stomach Mucosa stomach
7 chr2:231289000-231299400 Weak transcription NHLF lung
8 chr2:231289000-231309200 Weak transcription Aorta Aorta
9 chr2:231289600-231295400 Weak transcription Small Intestine intestine
10 chr2:231290000-231295200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr2:231291000-231295200 ZNF genes & repeats GM12878-XiMat blood
12 chr2:231291200-231299600 Weak transcription NHEK skin
13 chr2:231292200-231295400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr2:231292400-231296200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
15 chr2:231292400-231298400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr2:231292600-231298800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr2:231292800-231295800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
18 chr2:231293000-231295400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr2:231293400-231295200 ZNF genes & repeats Primary hematopoietic stem cells blood
20 chr2:231293400-231295400 Strong transcription Duodenum Smooth Muscle Duodenum
21 chr2:231293400-231295800 ZNF genes & repeats Fetal Muscle Trunk muscle
22 chr2:231293800-231295200 ZNF genes & repeats Primary T cells effector/memory enriched fromperipheralblood blood
23 chr2:231293800-231295200 ZNF genes & repeats Fetal Lung lung
24 chr2:231293800-231295400 Strong transcription Osteobl bone
25 chr2:231294000-231295600 Strong transcription Muscle Satellite Cultured Cells --
26 chr2:231294000-231295600 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr2:231294000-231299200 Weak transcription NHDF-Ad bronchial
28 chr2:231294000-231300400 Weak transcription HUVEC blood vessel
29 chr2:231294000-231301200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr2:231294200-231309600 Weak transcription Placenta Amnion Placenta Amnion
31 chr2:231294200-231311600 Weak transcription Colon Smooth Muscle Colon
32 chr2:231294400-231295200 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr2:231294400-231295200 Strong transcription Rectal Mucosa Donor 31 rectum
34 chr2:231294400-231295400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr2:231294400-231296200 Genic enhancers Primary T helper naive cells from peripheral blood blood
36 chr2:231294400-231296400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr2:231294600-231295200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr2:231294600-231295200 Strong transcription Sigmoid Colon Sigmoid Colon
39 chr2:231294600-231295800 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr2:231294600-231296400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr2:231294600-231297400 Genic enhancers Primary B cells from cord blood blood
42 chr2:231294600-231298200 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
43 chr2:231294600-231298400 Genic enhancers Primary T helper cells PMA-I stimulated --
44 chr2:231294600-231299400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr2:231294800-231295200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr2:231294800-231295200 Genic enhancers Primary monocytes fromperipheralblood blood
47 chr2:231294800-231295200 Strong transcription Ovary ovary
48 chr2:231294800-231295200 Genic enhancers Pancreas Pancrea
49 chr2:231294800-231295200 ZNF genes & repeats Skeletal Muscle Male skeletal muscle
50 chr2:231294800-231295400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015