Variant report

Variant	rs13419041
Chromosome Location	chr2:206308904-206308905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11887228	0.83[AMR][1000 genomes]
rs1473084	1.00[EUR][1000 genomes]
rs16837286	1.00[EUR][1000 genomes]
rs16837294	1.00[EUR][1000 genomes]
rs1974688	1.00[EUR][1000 genomes]
rs2160383	1.00[EUR][1000 genomes]
rs4377318	1.00[EUR][1000 genomes]
rs4625893	1.00[EUR][1000 genomes]
rs56827879	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61665423	1.00[EUR][1000 genomes]
rs6725078	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756042	1.00[EUR][1000 genomes]
rs6756917	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062407	1.00[EUR][1000 genomes]
rs73062568	1.00[EUR][1000 genomes]
rs73065003	1.00[EUR][1000 genomes]
rs73065009	1.00[EUR][1000 genomes]
rs991689	1.00[EUR][1000 genomes]
rs9973667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv10162	chr2:206272092-206525287	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv19770	chr2:206283097-206671319	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206276800-206326800	Weak transcription	Aorta	Aorta
2	chr2:206293200-206329600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:206303600-206316600	Weak transcription	HSMM	muscle
4	chr2:206304200-206312600	Weak transcription	Ovary	ovary
5	chr2:206304200-206321600	Weak transcription	Psoas Muscle	Psoas
6	chr2:206305800-206318400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:206308600-206311200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:206308800-206311000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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