Variant report

Variant	rs6756042
Chromosome Location	chr2:206257233-206257234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13419041	1.00[EUR][1000 genomes]
rs1473084	1.00[EUR][1000 genomes]
rs16837286	1.00[EUR][1000 genomes]
rs16837294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974688	1.00[EUR][1000 genomes]
rs2160383	1.00[EUR][1000 genomes]
rs4377318	1.00[EUR][1000 genomes]
rs4625893	1.00[EUR][1000 genomes]
rs56827879	1.00[EUR][1000 genomes]
rs57531776	0.83[ASN][1000 genomes]
rs61665423	1.00[EUR][1000 genomes]
rs6711300	1.00[ASN][1000 genomes]
rs6725078	1.00[EUR][1000 genomes]
rs6756917	1.00[EUR][1000 genomes]
rs73062407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849226	0.83[ASN][1000 genomes]
rs849227	0.83[ASN][1000 genomes]
rs849249	0.83[ASN][1000 genomes]
rs991689	1.00[EUR][1000 genomes]
rs9973667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206253600-206260600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:206255800-206259600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:206256000-206260600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:206256800-206257600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:206256800-206258000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:206257000-206257800	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links