Variant report

Variant	rs56827879
Chromosome Location	chr2:206270036-206270037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11887228	1.00[AMR][1000 genomes]
rs13419041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1473084	1.00[EUR][1000 genomes]
rs16837286	1.00[EUR][1000 genomes]
rs16837294	1.00[EUR][1000 genomes]
rs1974688	1.00[EUR][1000 genomes]
rs2160383	1.00[EUR][1000 genomes]
rs4377318	1.00[EUR][1000 genomes]
rs4625893	1.00[EUR][1000 genomes]
rs61665423	1.00[EUR][1000 genomes]
rs6725078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756042	1.00[EUR][1000 genomes]
rs6756917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062407	1.00[EUR][1000 genomes]
rs73062568	1.00[EUR][1000 genomes]
rs73065003	1.00[EUR][1000 genomes]
rs73065009	1.00[EUR][1000 genomes]
rs7584893	0.83[AMR][1000 genomes]
rs7600366	0.85[AMR][1000 genomes]
rs991689	1.00[EUR][1000 genomes]
rs9973667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206265400-206273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:206265600-206276400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:206268600-206286600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:206269400-206270200	Enhancers	NHLF	lung
5	chr2:206269400-206271400	Enhancers	HUVEC	blood vessel
6	chr2:206269800-206270200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:206269800-206270200	Flanking Active TSS	Osteobl	bone
8	chr2:206269800-206270400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:206269800-206270600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:206269800-206270600	Flanking Active TSS	NH-A	brain
11	chr2:206269800-206270800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:206269800-206271000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:206269800-206271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:206269800-206271000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:206269800-206271000	Enhancers	NHEK	skin
16	chr2:206269800-206271200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:206269800-206272000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:206269800-206272600	Enhancers	NHDF-Ad	bronchial
19	chr2:206269800-206274600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:206270000-206270200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:206270000-206270600	Enhancers	Small Intestine	intestine
22	chr2:206270000-206270600	Enhancers	HSMMtube	muscle
23	chr2:206270000-206270800	Enhancers	Ovary	ovary
24	chr2:206270000-206271200	Enhancers	HSMM	muscle

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