Variant report

Variant	rs61665423
Chromosome Location	chr2:206250804-206250805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13419041	1.00[EUR][1000 genomes]
rs1473084	1.00[EUR][1000 genomes]
rs16837286	1.00[EUR][1000 genomes]
rs16837294	1.00[EUR][1000 genomes]
rs1974688	1.00[EUR][1000 genomes]
rs2160383	1.00[EUR][1000 genomes]
rs4377318	1.00[EUR][1000 genomes]
rs4625893	1.00[EUR][1000 genomes]
rs56827879	1.00[EUR][1000 genomes]
rs6725078	1.00[EUR][1000 genomes]
rs6756042	1.00[EUR][1000 genomes]
rs6756917	1.00[EUR][1000 genomes]
rs73062407	1.00[EUR][1000 genomes]
rs73062568	1.00[EUR][1000 genomes]
rs73065003	1.00[EUR][1000 genomes]
rs73065009	1.00[EUR][1000 genomes]
rs991689	1.00[EUR][1000 genomes]
rs9973667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206249400-206252400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:206250200-206252200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:206250800-206251000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:206250800-206251200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:206250800-206251200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:206250800-206251200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:206250800-206251200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:206250800-206251200	Enhancers	Brain Anterior Caudate	brain
9	chr2:206250800-206251200	Enhancers	Ovary	ovary
10	chr2:206250800-206251400	Enhancers	HSMM	muscle
11	chr2:206250800-206251400	Enhancers	NHLF	lung
12	chr2:206250800-206251400	Enhancers	Osteobl	bone
13	chr2:206250800-206251600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:206250800-206253000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:206250800-206253200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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