Variant report

Variant	rs6725078
Chromosome Location	chr2:206274467-206274468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11887228	1.00[AMR][1000 genomes]
rs13419041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1473084	1.00[EUR][1000 genomes]
rs16837286	1.00[EUR][1000 genomes]
rs16837294	1.00[EUR][1000 genomes]
rs1974688	1.00[EUR][1000 genomes]
rs2160383	1.00[EUR][1000 genomes]
rs4377318	1.00[EUR][1000 genomes]
rs4625893	1.00[EUR][1000 genomes]
rs56827879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61665423	1.00[EUR][1000 genomes]
rs6756042	1.00[EUR][1000 genomes]
rs6756917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062407	1.00[EUR][1000 genomes]
rs73062568	1.00[EUR][1000 genomes]
rs73065003	1.00[EUR][1000 genomes]
rs73065009	1.00[EUR][1000 genomes]
rs7584893	0.83[AMR][1000 genomes]
rs7600366	0.85[AMR][1000 genomes]
rs991689	1.00[EUR][1000 genomes]
rs9973667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv10162	chr2:206272092-206525287	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206265600-206276400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:206268600-206286600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:206269800-206274600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:206270600-206276000	Weak transcription	Small Intestine	intestine
5	chr2:206270600-206308000	Weak transcription	HSMMtube	muscle
6	chr2:206270800-206276000	Weak transcription	Ovary	ovary
7	chr2:206272600-206275200	Bivalent Enhancer	Fetal Lung	lung
8	chr2:206272600-206277200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:206272800-206274800	Enhancers	HSMM	muscle
10	chr2:206273000-206274600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:206273000-206274800	Enhancers	NHDF-Ad	bronchial
12	chr2:206273000-206276000	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:206273000-206276200	Weak transcription	Adipose Nuclei	Adipose
14	chr2:206273000-206276200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:206273600-206274800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:206273600-206276200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:206273800-206274800	Enhancers	Duodenum Mucosa	Duodenum
18	chr2:206274200-206276200	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:206274400-206275400	Weak transcription	Fetal Brain Male	brain
20	chr2:206274400-206276000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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