Variant report

Variant	rs13429804
Chromosome Location	chr2:190623917-190623918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190619706..190621333-chr2:190623417..190625217,2	K562	blood:
2	chr2:190617951..190619688-chr2:190622413..190624080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223249	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10176506	1.00[AMR][1000 genomes]
rs10197551	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197577	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10209952	0.83[AFR][1000 genomes]
rs10497706	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13390239	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13400261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411095	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416709	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418043	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418158	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831975	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2118453	0.92[AFR][1000 genomes]
rs5742923	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742932	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742935	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742979	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743009	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs5743026	0.81[AFR][1000 genomes]
rs5743042	0.81[AFR][1000 genomes]
rs5743064	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs5743176	0.85[YRI][hapmap]
rs57785091	0.92[AFR][1000 genomes]
rs6711817	0.92[AFR][1000 genomes]
rs6746951	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6760126	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048418	0.92[AFR][1000 genomes]
rs73048420	0.92[AFR][1000 genomes]
rs73048432	0.92[AFR][1000 genomes]
rs73048437	0.92[AFR][1000 genomes]
rs73048445	0.95[AFR][1000 genomes]
rs73049960	0.91[AFR][1000 genomes]
rs73050376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7560735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7577159	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs7583918	1.00[AMR][1000 genomes]
rs7600993	1.00[YRI][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
2	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
3	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
4	chr2:190589400-190626600	Weak transcription	HUVEC	blood vessel
5	chr2:190594800-190627000	Weak transcription	Gastric	stomach
6	chr2:190597800-190626600	Weak transcription	Fetal Heart	heart
7	chr2:190599000-190626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:190601400-190626800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:190602400-190626400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:190603800-190626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:190605000-190626800	Weak transcription	Fetal Brain Male	brain
12	chr2:190607000-190626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:190607000-190626800	Weak transcription	NH-A	brain
14	chr2:190607400-190626800	Weak transcription	HSMMtube	muscle
15	chr2:190608600-190626200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:190609600-190626600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:190609600-190627000	Weak transcription	Small Intestine	intestine
18	chr2:190609800-190626200	Weak transcription	HMEC	breast
19	chr2:190610000-190626800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:190610200-190627000	Weak transcription	Lung	lung
21	chr2:190610200-190627000	Weak transcription	Spleen	Spleen
22	chr2:190610400-190626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:190610400-190626800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:190610400-190626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:190610400-190627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:190611200-190625800	Weak transcription	NHEK	skin
27	chr2:190611400-190626600	Weak transcription	NHLF	lung
28	chr2:190611800-190626000	Weak transcription	HepG2	liver
29	chr2:190613200-190626200	Weak transcription	A549	lung
30	chr2:190613200-190626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:190613200-190626800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:190613200-190626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:190613200-190626800	Weak transcription	Brain Substantia Nigra	brain
34	chr2:190613200-190626800	Weak transcription	Colonic Mucosa	Colon
35	chr2:190613200-190627000	Weak transcription	Left Ventricle	heart
36	chr2:190613600-190626600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr2:190613600-190626800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:190613600-190626800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:190613800-190626000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:190614800-190626800	Weak transcription	Brain Germinal Matrix	brain
41	chr2:190615000-190626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:190615000-190626800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:190617200-190626000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:190617200-190626800	Weak transcription	Thymus	Thymus
45	chr2:190617600-190625800	Weak transcription	Fetal Brain Female	brain
46	chr2:190617600-190626400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr2:190617600-190626600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:190617600-190626800	Weak transcription	Brain Angular Gyrus	brain
49	chr2:190617600-190626800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr2:190617800-190625800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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