Variant report

Variant	rs13434876
Chromosome Location	chr4:76762674-76762675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76760282..76762958-chr4:76763569..76766222,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10856860	0.98[ASN][1000 genomes]
rs11097121	0.82[CHB][hapmap]
rs11935073	0.85[CHB][hapmap]
rs17000786	0.85[CHB][hapmap]
rs17000794	0.85[CHB][hapmap]
rs17000864	0.85[CHB][hapmap]
rs1876099	0.92[ASN][1000 genomes]
rs2089253	0.85[CHB][hapmap]
rs28501590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324686	0.85[CHB][hapmap]
rs324690	0.85[CHB][hapmap]
rs324693	0.85[CHB][hapmap]
rs324703	0.85[CHB][hapmap]
rs324714	0.85[CHB][hapmap]
rs324719	0.85[CHB][hapmap]
rs324723	0.85[CHB][hapmap]
rs324726	0.85[CHB][hapmap]
rs324727	0.85[CHB][hapmap]
rs324733	0.85[CHB][hapmap]
rs324735	0.85[CHB][hapmap]
rs324740	0.85[CHB][hapmap]
rs4262008	0.85[CHB][hapmap]
rs4412019	1.00[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57961226	0.87[ASN][1000 genomes]
rs6531959	0.84[ASN][1000 genomes]
rs6531960	0.84[ASN][1000 genomes]
rs6832374	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837321	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6856162	0.85[CHB][hapmap]
rs7340822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7340823	0.98[ASN][1000 genomes]
rs7682494	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692052	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696758	0.97[ASN][1000 genomes]
rs924937	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:76743800-76764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:76756400-76764800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:76758800-76762800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:76761000-76762800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:76761000-76763200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:76762400-76762800	Enhancers	Fetal Heart	heart
8	chr4:76762400-76762800	Enhancers	HepG2	liver
9	chr4:76762400-76763200	Enhancers	Left Ventricle	heart
10	chr4:76762400-76763400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:76762600-76762800	Enhancers	K562	blood
12	chr4:76762600-76763200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:76762600-76763200	Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr4:76762600-76763200	Enhancers	Right Atrium	heart
15	chr4:76762600-76763400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:76762600-76763400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:76762600-76763400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:76762600-76763400	Enhancers	Brain Substantia Nigra	brain
19	chr4:76762600-76763400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:76762600-76763600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:76762600-76763600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:76762600-76763600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:76762600-76763600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:76762600-76763600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:76762600-76763600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:76762600-76763600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr4:76762600-76763600	Flanking Active TSS	A549	lung
28	chr4:76762600-76763800	Enhancers	HSMMtube	muscle

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