Variant report

Variant	rs7340822
Chromosome Location	chr4:76765026-76765027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76746532..76748297-chr4:76763794..76766234,2	MCF-7	breast:
2	chr4:76760282..76762958-chr4:76763569..76766222,2	MCF-7	breast:
3	chr4:76598734..76600560-chr4:76764992..76767799,2	K562	blood:

Variant related genes	Relation type
ENSG00000138757	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10856860	0.97[ASN][1000 genomes]
rs11097121	0.82[CHB][hapmap]
rs13434876	0.98[ASN][1000 genomes]
rs17000786	0.85[CHB][hapmap]
rs17000794	0.85[CHB][hapmap]
rs17000864	0.85[CHB][hapmap]
rs1876099	0.91[ASN][1000 genomes]
rs2062958	0.80[EUR][1000 genomes]
rs2089253	0.85[CHB][hapmap]
rs28501590	0.98[ASN][1000 genomes]
rs324686	0.85[CHB][hapmap]
rs324690	0.85[CHB][hapmap]
rs324693	0.85[CHB][hapmap]
rs324703	0.85[CHB][hapmap]
rs324714	0.85[CHB][hapmap]
rs324719	0.85[CHB][hapmap]
rs324723	0.85[CHB][hapmap]
rs324726	0.85[CHB][hapmap]
rs324727	0.85[CHB][hapmap]
rs324733	0.85[CHB][hapmap]
rs324735	0.85[CHB][hapmap]
rs324740	0.85[CHB][hapmap]
rs4262008	0.85[CHB][hapmap]
rs4412019	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs57961226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6531959	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6531960	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832374	0.98[ASN][1000 genomes]
rs6837321	0.95[ASN][1000 genomes]
rs6856162	0.85[CHB][hapmap]
rs7340823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682494	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7692052	0.94[ASN][1000 genomes]
rs7696758	0.95[ASN][1000 genomes]
rs924937	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76763200-76765600	Weak transcription	Right Atrium	heart
2	chr4:76763200-76769000	Weak transcription	Left Ventricle	heart
3	chr4:76763200-76770600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:76763400-76765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:76763400-76765400	Weak transcription	Placenta	Placenta
6	chr4:76763400-76765600	Enhancers	HepG2	liver
7	chr4:76763400-76769000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:76763400-76769000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:76763400-76769200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:76763400-76769600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:76763400-76770600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:76763400-76773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:76763600-76765200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:76763600-76765200	Enhancers	A549	lung
15	chr4:76763600-76765400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:76763600-76765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:76763600-76768600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:76763600-76769000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:76763600-76769000	Weak transcription	Fetal Heart	heart
20	chr4:76763600-76769000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:76763600-76769200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:76763600-76769200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:76763600-76770600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:76763800-76765400	Weak transcription	K562	blood
25	chr4:76764600-76766200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:76764800-76765600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:76764800-76766000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:76764800-76766000	Enhancers	Ovary	ovary
29	chr4:76764800-76766000	Enhancers	Psoas Muscle	Psoas
30	chr4:76764800-76766200	Enhancers	HSMM	muscle
31	chr4:76764800-76766400	Enhancers	Hela-S3	cervix
32	chr4:76764800-76766400	Enhancers	NHDF-Ad	bronchial
33	chr4:76764800-76766600	Enhancers	NHLF	lung
34	chr4:76764800-76767200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:76764800-76767600	Enhancers	NH-A	brain
36	chr4:76764800-76767600	Enhancers	Osteobl	bone
37	chr4:76764800-76769000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:76765000-76765200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:76765000-76765200	Enhancers	Brain Anterior Caudate	brain
40	chr4:76765000-76765400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:76765000-76765400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:76765000-76765400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:76765000-76765600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:76765000-76765800	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:76765000-76766000	Enhancers	Adipose Nuclei	Adipose
46	chr4:76765000-76766200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:76765000-76766200	Enhancers	HSMMtube	muscle

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