Variant report

Variant	rs1876099
Chromosome Location	chr4:76756560-76756561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10856860	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13434876	0.92[ASN][1000 genomes]
rs2062958	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28501590	0.92[ASN][1000 genomes]
rs4412019	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57961226	0.80[ASN][1000 genomes]
rs6531959	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6531960	0.83[ASN][1000 genomes]
rs6832374	0.92[ASN][1000 genomes]
rs6837321	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7340822	0.91[ASN][1000 genomes]
rs7340823	0.91[ASN][1000 genomes]
rs7682494	0.92[ASN][1000 genomes]
rs7692052	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7696758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs924937	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:76743800-76764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:76753400-76758600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:76753400-76762600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:76754200-76762600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:76756200-76760200	Weak transcription	A549	lung
7	chr4:76756400-76764800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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